usedhap {PolyHaplotyper} | R Documentation |
Find all used (inferred) haplotypes
Description
Find all haplotypes for a haploblock that were inferred to be present in the population (i.e. all haplotypes used for haplotyping any of the individuals)
Usage
usedhap(hapresults, haploblock)
Arguments
hapresults |
list as returned by inferhaplotypes, or one element of such a list (i.e. the results for one haploblock) |
haploblock |
if hapresults is one element of the return value of inferHaplotypes, haploblock should be missing of NULL; else haploblock is a single value indicating the haploblock: either its name of its index in hapresults |
Details
This function works with the results of inferHaplotypes; the setting of dropUnused does not affect this function
Value
an array with the haplotypes that are used in the population. The haplotypes are in columns, with the haplotype numbers as colnames; the markers are in rows.
Examples
data(PolyHaplotyper_small)
# show the composition of haplotypes inferred to be present
# in the first haploblock:
usedhap(hapresults=phresults, haploblock=1)
[Package PolyHaplotyper version 1.0.1 Index]