| run.SATlotyper {PolyHaplotyper} | R Documentation |
A simple interface to run SATlotyper
Description
A simple interface to run SATlotyper
Usage
run.SATlotyper(path_to_SATlotyper, infile, outfile,
SAT_solver="sat4j.conf")
Arguments
path_to_SATlotyper |
path to the folder where SATlotyper.jar and the *.conf files of the SAT-solvers are located |
infile |
name (and path) to the SATlotyper input file |
outfile |
name (and path) for the SATlotyper output file (an xml file) |
SAT_solver |
name of the *.conf file for the SAT-solver to use. Default "sat4j.conf" because this works under both Windows and Linux. |
Details
This function issues a system command to invoke SATlotyper. Java and SATlotyper must be installed. This is just a simple interface for convenience; for more control run SATlotyper directly from the command window.
Value
The return is a list with elements:
$cmd : the command passed to the system
$result: screen output from SATlotyper; this
contains some extra info not present in the output xml file)
The main result is the outfile