calcMrkHaptable {PolyHaplotyper}

produce a table of nr of markers vs nr of haplotypes

Description

produce a table of nr of markers vs nr of haplotypes

Usage

calcMrkHaptable(ovwFS)

Arguments

ovwFS

a list as produced by overviewFS. Only the first 2 columns of list item ovw are used

Value

a frequency table with the numbers of haploblocks, with all combinations of marker counts and inferred haplotype counts per haploblock. The column with haplotype count NA (if any) shows the haploblocks for which no haplotype solution was found (the reason for that would usually be found in column 1 of ovwFS$messages)

Examples

data(PolyHaplotyper_small)
phovw <- overviewByFS(haploblock=phblocks, parents=phpar, FS=phFS,
                     hapresults=phresults)
# in this small dataset there are only 2 haploblocks, each with 4 markers:
calcMrkHaptable(ovwFS=phovw)
# in both haploblocks 5 haplotypes are inferred