phecap_validate_phenotyping_model {PheCAP}

Validate the Phenotyping Model using the Validation Labels

Description

Apply the trained model to all patients in the validation dataset, and measure the prediction accuracy via ROC and AUC.

Usage

phecap_validate_phenotyping_model(data, model)

Arguments

data

an object of class PhecapData, obtained by calling PhecapData(...)

model

an object of class PhecapModel, obtained by calling phecap_train_phenotyping_model.

Value

An object of class PhecapValidation, with components

method

the method used for model training

train_roc

ROC on training dataset

train_auc

AUC on training dataset

split_roc

average ROC on random splits of training dataset

split_auc

average AUC on random splits of training dataset

valid_roc

ROC on validation dataset

valid_auc

AUC on validation dataset

See Also

See PheCAP-package for code examples.