plot.prismaMF {PRISMA}

Generics For PRISMA Objects

Description

Print and plot generic for the PRISMA matrix factorization objects.

Usage

## S3 method for class 'prismaMF'
plot(x, nLines = NULL, baseIndex = NULL, sampleIndex = NULL,
minValue = NULL, noRowClustering = FALSE, noColClustering = FALSE, type
= c("base", "coordinates"), ...)

Arguments

x

PRISMA matrix factorization object

nLines

number of lines that should be plotted

baseIndex

which bases should be plotted

sampleIndex

which samples should be plotted

minValue

cut-off value, i.e., every value smaller than minValue won't be shown

noRowClustering

don't cluster the rows

noColClustering

don't cluster the columns

type

show the base (type = "base", i.e. the B matrix) or show the coordinate (type = "coordinates", i.e. the C matrix).

...

not used

Author(s)

Tammo Krueger <[e-mail]>

See Also

estimateDimension, prismaHclust, prismaDuplicatePCA, prismaNMF

Examples

# please see the vingette for examles