runEnrichment {PEIMAN2}R Documentation

Run singular enrichment analysis (SEA) for a given list of protein

Description

This function takes proteins with their UniProt accession code, runs singular enrichment (SEA) analysis, and returns enrichment results.

Usage

runEnrichment(protein, os.name, p.adj.method = "BH")

Arguments

protein

A character vector with protein UniProt accession codes.

os.name

A character vector of length one with exact taxonomy name of species. If you do not know the the exact taxonomy name of species you are working with, please read getTaxonomyName.

p.adj.method

The adjustment method to correct for multiple testing. The default value is 'BH'. Run/see p.adjust.methods to get a list of possible methods.

Value

The result is a dataframe with the following columns:

Examples

enrich1 <- runEnrichment(protein = exmplData1$pl1, os.name = 'Homo sapiens (Human)')

[Package PEIMAN2 version 0.1.0 Index]