read.rarecol {PAICE}

Read files containing rarefaction curves of colonization events

Description

An import method for data generated by rarecol.

Usage

read.rarecol(gen, field)

Arguments

gen, field

filenames of genetic and field estimation data.

Details

This function uses read.table to import both files created by rarecol.

Value

This function returns an object of class rarecol. This object is a list in which each element is a data.frame containing information about colonization inference.

References

Coello, A.J., Fernandez-Mazuecos, M., Heleno, R.H., Vargas, P. (2022). PAICE: A new R package to estimate the number of inter-island colonizations considering haplotype data and sample size. Journal of Biogeography, 49(4), 577-589.DOI: 10.1111/jbi.14341

See Also

rarecol for building of rarefaction curves of colonization events.

Examples

data(CmonsData)
data(CmonsNetwork)
# Make rarefaction curves and save it in working directory,
## Note: only one replicate per sampling to it quickly
rarecol(data = CmonsData, network = CmonsNetwork,
        replicates_field = 1, replicates_genetic = 1,
        monitor = TRUE, file = "rareData")
# Genetic estimation has the suffix "_gen" and the field "_field"
raredata <- read.rarecol(gen = "rareData_gen.csv",
                         field = "rareData_field.csv")
str(raredata) # Show structure of data imported
# Remove files created
file.remove("rareData_gen.csv", "rareData_field.csv")