| classification_paths_from_taxonomy {OpenTreeChronograms} | R Documentation |
Gets classification paths for a vector of taxa
Description
This uses the taxize package's wrapper of the Global Names Resolver to get taxonomic paths for the vector of taxa you pass in. Sources is a vector of source labels in order (though it works best if everything uses the same taxonomy, so we recommend doing just one source). You can see options by doing taxize::gnr_datasources(). Our default is Catalogue of Life
Usage
classification_paths_from_taxonomy(taxa, sources = "Catalogue of Life")
Arguments
taxa |
Vector of taxon names |
sources |
Vector of names of preferred sources; see taxize::gnr_datasources(). Currently supports 100 taxonomic resources, see details. |
Details
Taxonomies supported by taxize::gnr_datasources()
Catalogue of Life
Wikispecies
ITIS
NCBI
Index Fungorum
GRIN Taxonomy for Plants
Union 4
The Interim Register of Marine and Nonmarine Genera
World Register of Marine Species
Freebase
GBIF Backbone Taxonomy
EOL
Passiflora vernacular names
Inventory of Fish Species in the Wami River Basin
Pheasant Diversity and Conservation in the Mt. Gaoligonshan Region
Finding Species
Birds of Lindi Forests Plantation
Nemertea
Kihansi Gorge Amphibian Species Checklist
Mushroom Observer
TaxonConcept
Amphibia and Reptilia of Yunnan
Common names of Chilean Plants
Invasive Species of Belgium
ZooKeys
COA Wildlife Conservation List
AskNature
China: Yunnan, Southern Gaoligongshan, Rapid Biological Inventories Report No. 04
Native Orchids from Gaoligongshan Mountains, China
Illinois Wildflowers
Coleorrhyncha Species File
/home/dimus/files/dwca/zoological names.zip
Peces de la zona hidrogeográfica de la Amazonia, Colombia (Spreadsheet)
Eastern Mediterranean Syllidae
Gaoligong Shan Medicinal Plants Checklist
birds_of_tanzania
AmphibiaWeb
tanzania_plant_sepecimens
Papahanaumokuakea Marine National Monument
Taiwanese IUCN species list
BioPedia
AnAge
Embioptera Species File
Global Invasive Species Database
Sendoya S., Fernández F. AAT de hormigas (Hymenoptera: Formicidae) del Neotrópico 1.0 2004 (Spreadsheet)
Flora of Gaoligong Mountains
ARKive
True Fruit Flies (Diptera, Tephritidae) of the Afrotropical Region
3i - Typhlocybinae Database
CATE Sphingidae
ZooBank
Diatoms
AntWeb
Endemic species in Taiwan
Dermaptera Species File
Mantodea Species File
Birds of the World: Recommended English Names
New Zealand Animalia
Blattodea Species File
Plecoptera Species File
/home/dimus/files/dwca/clemens.zip
Coreoidea Species File
Freshwater Animal Diversity Assessment - Normalized export
Catalogue of Vascular Plant Species of Central and Northeastern Brazil
Wikipedia in EOL
Database of Vascular Plants of Canada (VASCAN)
Phasmida Species File
OBIS
USDA NRCS PLANTS Database
Catalog of Fishes
Aphid Species File
The National Checklist of Taiwan
Psocodea Species File
FishBase
3i - Typhlocybinae Database
Belgian Species List
EUNIS
CU*STAR
Orthoptera Species File
Bishop Museum
IUCN Red List of Threatened Species
BioLib.cz
Tropicos - Missouri Botanical Garden
nlbif
The International Plant Names Index
Index to Organism Names
uBio NameBank
Arctos
Checklist of Beetles (Coleoptera) of Canada and Alaska. Second Edition.
The Paleobiology Database
The Reptile Database
The Mammal Species of The World
BirdLife International
Checklist da Flora de Portugal (Continental, Açores e Madeira)
FishBase Cache
Silva
Open Tree of Life Reference Taxonomy
iNaturalist
The Interim Register of Marine and Nonmarine Genera
Gymno
Value
A list with resolved taxa (a tibble, from taxize::gnr_resolve) and a vector of taxa not resolved