olink_displayPlateLayout {OlinkAnalyze} | R Documentation |
Plot all plates colored by a variable
Description
Displays each plate in a facet with cells colored by the given variable using ggplot and ggplot2::geom_tile.
Usage
olink_displayPlateLayout(
data,
fill.color,
PlateSize = 96,
num_ctrl = 8,
rand_ctrl = FALSE,
Product,
include.label = FALSE
)
Arguments
data |
tibble/data frame in long format returned from the olink_plate_randomizer function. |
fill.color |
Column name to be used as coloring variable for wells. |
PlateSize |
Integer. Either 96 or 48. 96 is default. |
num_ctrl |
Numeric. Number of controls on each plate (default = 8) |
rand_ctrl |
Logical. Whether controls are added to be randomized across the plate (default = FALSE) |
Product |
String. Name of Olink product used to set PlateSize if not provided. Optional. |
include.label |
Should the variable group be shown in the plot. |
Value
An object of class "ggplot" showing each plate in a facet with the cells colored by values in column fill.color in input data
.
See Also
olink_plate_randomizer()
for generating a plating schemeolink_displayPlateDistributions()
for validating that sites are properly randomized
Examples
randomized.manifest <- olink_plate_randomizer(manifest)
olink_displayPlateLayout(data = randomized.manifest, fill.color="Site")