R: Plot the clusters in one projection of the bipartite network

plotCluster {NIMAA}

R Documentation

Plot the clusters in one projection of the bipartite network

Description

This function makes an interactive network figure that shows nodes in which nodes belonging to the same cluster are colored the same and nodes belonging to other clusters are colored differently. This function has been customized to use the output of findCluster.

Usage

plotCluster(graph, cluster, ...)

Arguments

`graph`	An igraph object.
`cluster`	An igraph cluster object.
`...`	Pass to `forceNetwork`

Value

A networkD3 object.

Examples

# generate an incidence matrix
data <- matrix(c(1, 0, 0, 0, 1, 1, 1, 0, 0, 0, 1, 1, 1, 0, 0), nrow = 3)
colnames(data) <- letters[1:5]
rownames(data) <- LETTERS[1:3]

# run findCluster() to do clustering
cls <- findCluster(
  data,
  part = 1,
  method = "all",
  normalization = FALSE,
  rm_weak_edges = TRUE,
  comparison = FALSE
)
# plot the cluster with Louvain method
plotCluster(graph = cls$graph, cluster = cls$louvain)