get.pedmap {MoBPS} | R Documentation |
Generate plink-file (pedmap)
Description
Generate a ped and map file (PLINK format) for selected groups and chromosome
Usage
get.pedmap(
population,
path = NULL,
database = NULL,
gen = NULL,
cohorts = NULL,
non.genotyped.as.missing = FALSE,
use.id = FALSE
)
Arguments
population |
Population list |
path |
Location to save pedmap-file |
database |
Groups of individuals to consider for the export |
gen |
Quick-insert for database (vector of all generations to export) |
cohorts |
Quick-insert for database (vector of names of cohorts to export) |
non.genotyped.as.missing |
Set to TRUE to replaced non-genotyped entries with "./." |
use.id |
Set to TRUE to use MoBPS ids instead of Sex_Nr_Gen based names |
Value
Ped and map-file for in gen/database/cohorts selected individuals
Examples
data(ex_pop)
file_path <- tempdir()
get.pedmap(path=file_path, ex_pop, gen=2)
file.remove(paste0(file_path, ".ped"))
file.remove(paste0(file_path, ".map"))
[Package MoBPS version 1.6.64 Index]