get.geno {MoBPS} | R Documentation |
Derive genotypes of selected individuals
Description
Function to devide genotypes of selected individuals
Usage
get.geno(
population,
database = NULL,
gen = NULL,
cohorts = NULL,
chromosomen = "all",
export.alleles = FALSE,
non.genotyped.as.missing = FALSE,
use.id = FALSE
)
Arguments
population |
Population list |
database |
Groups of individuals to consider for the export |
gen |
Quick-insert for database (vector of all generations to export) |
cohorts |
Quick-insert for database (vector of names of cohorts to export) |
chromosomen |
Beschraenkung des Genotypen auf bestimmte Chromosomen (default: 1) |
export.alleles |
If TRUE export underlying alleles instead of just 012 |
non.genotyped.as.missing |
Set to TRUE to replace non-genotyped markers with NA |
use.id |
Set to TRUE to use MoBPS ids instead of Sex_Nr_Gen based names (default: FALSE) |
Value
Genotype data for in gen/database/cohorts selected individuals
Examples
data(ex_pop)
geno <- get.geno(ex_pop, gen=2)
[Package MoBPS version 1.6.64 Index]