get.geno {MoBPS}

Derive genotypes of selected individuals

Description

Function to devide genotypes of selected individuals

Usage

get.geno(
  population,
  database = NULL,
  gen = NULL,
  cohorts = NULL,
  chromosomen = "all",
  export.alleles = FALSE,
  non.genotyped.as.missing = FALSE,
  use.id = FALSE
)

Arguments

population

Population list

database

Groups of individuals to consider for the export

gen

Quick-insert for database (vector of all generations to export)

cohorts

Quick-insert for database (vector of names of cohorts to export)

chromosomen

Beschraenkung des Genotypen auf bestimmte Chromosomen (default: 1)

export.alleles

If TRUE export underlying alleles instead of just 012

non.genotyped.as.missing

Set to TRUE to replace non-genotyped markers with NA

use.id

Set to TRUE to use MoBPS ids instead of Sex_Nr_Gen based names (default: FALSE)

Value

Genotype data for in gen/database/cohorts selected individuals

Examples

data(ex_pop)
geno <- get.geno(ex_pop, gen=2)