effect.estimate.add {MoBPS}

Estimation of marker effects

Description

Function to estimate marker effects

Usage

effect.estimate.add(geno, pheno, map = NULL, scaling = TRUE)

Arguments

geno

genotype dataset (marker x individuals)

pheno

phenotype dataset (each phenotype in a row)

map

genomic map

scaling

Set FALSE to not perform variance scaling

Value

Empirical kinship matrix (IBD-based since Founders)

Examples

data(ex_pop)
pheno <- get.pheno(ex_pop, gen=1:5)
geno <- get.geno(ex_pop, gen=1:5)
map <- get.map(ex_pop, use.snp.nr=TRUE)
real.bv.add <- effect.estimate.add(geno, pheno, map)