fun_setting {MicroSEC}

Mutated position search function.

Description

This function attempts to find the mutated bases in each read.

Usage

fun_setting(pre, post, neighbor_seq, neighbor_length, alt_length)

Arguments

pre

The 5' side bases of the sequence for searching.

post

The 3' side bases of the sequence for searching.

neighbor_seq

Short reference sequence around the mutation.

neighbor_length

The length from the mutation to the ends of the short reference sequence.

alt_length

The length of altered bases.

Value

list(pre_search_length, post_search_length, peri_seq_1, peri_seq_2)