fun_repeat_check {MicroSEC} | R Documentation |
Repeat check function.
Description
This function attempts to check the repetitive sequence around the mutation.
Usage
fun_repeat_check(rep_a, rep_b, ref_seq, ref_width, del)
Arguments
rep_a |
The shorter sequence of Ref and Alt. |
rep_b |
The longer sequence of Ref and Alt. |
ref_seq |
Reference sequence around the mutation. |
ref_width |
Search length for ref_seq. |
del |
Insertion: 0, Deletion: 1 |
Value
list(pre_rep_status, post_rep_status, pre_rep_short, post_rep_short, homopolymer_status)
[Package MicroSEC version 2.1.3 Index]