fun_repeat_check {MicroSEC}

Repeat check function.

Description

This function attempts to check the repetitive sequence around the mutation.

Usage

fun_repeat_check(rep_a, rep_b, ref_seq, ref_width, del)

Arguments

rep_a

The shorter sequence of Ref and Alt.

rep_b

The longer sequence of Ref and Alt.

ref_seq

Reference sequence around the mutation.

ref_width

Search length for ref_seq.

del

Insertion: 0, Deletion: 1

Value

list(pre_rep_status, post_rep_status, pre_rep_short, post_rep_short, homopolymer_status)