fun_load_mutation {MicroSEC}

Mutation data file loader

Description

This function attempts to load the mutation information file.

Usage

fun_load_mutation(mutation_file, sample_name, ref_genome, chr_no)

Arguments

mutation_file

Path of the mutation information file.

sample_name

Sample name.

ref_genome

Reference genome for the data.

chr_no

Reference genome chromosome number (human=24, mouse=22).

Value

df_mutation

Examples

fun_load_mutation(
  system.file("extdata", "mutation_list.tsv", package = "MicroSEC"),
  "sample",
  BSgenome.Hsapiens.UCSC.hg38::BSgenome.Hsapiens.UCSC.hg38,
  24
)