fun_homology {MicroSEC}

Homology check function.

Description

This function attempts to search the homologous regions.

Usage

fun_homology(
  msec,
  df_distant,
  min_homology_search,
  ref_genome,
  chr_no,
  progress_bar
)

Arguments

msec

Mutation filtering information.

df_distant

Sequences to be checked.

min_homology_search

Minimum length to define "homologous".

ref_genome

Reference genome for the data.

chr_no

Reference genome chromosome number (human=24, mouse=22).

progress_bar

"Y": You can see the progress visually.

Value

msec

Examples

## Not run: 
data(msec_read_checked)
data(homology_searched)
fun_homology(msec = msec_read_checked,
   df_distant = homology_searched,
   min_homology_search = 40,
   ref_genome = BSgenome.Hsapiens.UCSC.hg38::BSgenome.Hsapiens.UCSC.hg38,
   chr_no = 24,
   progress_bar = "N"
)

## End(Not run)