fun_hairpin_check {MicroSEC}

Hairpin-structure sequence check function

Description

This function attempts to find hairpin structure sequences.

Usage

fun_hairpin_check(hairpin_seq_tmp, ref_seq, hairpin_length, hair)

Arguments

hairpin_seq_tmp

The sequence to be checked.

ref_seq

Reference sequence around the mutation.

hairpin_length

The temporal length of hairpin sequences.

hair

The length of sequences to be checked.

Value

list(hairpin_length, whether hairpin sequences exist or not)