heatmapPlot {MetaIntegrator}

Generates a heatmap with effect sizes for all genes which pass a filter in all measured diseases

Description

Generates a heatmap with effect sizes for all genes which pass a filter in all measured diseases

Usage

heatmapPlot(metaObject, filterObject, colorRange = c(-1, 1),
  geneOrder = FALSE, datasetOrder = FALSE, displayPooled = TRUE,
  useFormattedNames = TRUE)

Arguments

metaObject

a Meta object which must have the $originalData, $metaAnalysis populated

filterObject

a MetaFilter object containing the signature genes that will be used for the heatmap

colorRange

a vector of length two with the minimum and maximum values for the heatmap colors. (default: c(-1,1))

geneOrder

FALSE if the genes should be ordered by pooled effect size in this datasets. Otherwise, the ordered names of the genes. (default: FALSE)

datasetOrder

FALSE if the datasets should be ordered alphabetically. Otherwise, the ordered names of the datasets (default: FALSE)

displayPooled

TRUE if the pooled effect sizes should be displayed. (default: TRUE)

useFormattedNames

TRUE if the formatted datasetNames should be displayed. (default: TRUE)

Value

Generates a heatmap with effect sizes for all genes which pass a filter

Author(s)

Winston A. Haynes

Examples

heatmapPlot(tinyMetaObject, tinyMetaObject$filterResults[[1]])