Mega2pedgene {Mega2R}

Execute the pedgene function on a transcript ranges

Description

Execute the pedgene function on the first gs default gene transcript ranges (gs = 1:100). Update the envir$pedgene_results data frame with the results.

Usage

Mega2pedgene(gs = 1:100, genes = NULL, envir = ENV)

Arguments

gs

a subrange of the default transcript ranges over which to calculate the Dopedgene function.

genes

a list of genes over which to calculate the DOpedgene function. The value, "*", means use all the transcripts in the selected Bioconductor database. If genes is NULL, the gs range of the internal refRanges will be used.

envir

'environment' containing SQLite database and other globals

Value

None the data frame with the results is stored in the environment and named pedgene_results, viz. envir$pedgene_results

See Also

init_pedgene

Examples

db = system.file("exdata", "seqsimm.db", package="Mega2R")
ENV = init_pedgene(db)
ENV$verbose = TRUE
Mega2pedgene(gs = 50:60)