R: Initialize vector of B quartets

initBquartets {MSCquartets}

R Documentation

Initialize vector of B quartets

This is a C++ function, used in TINNIKdist, to initialize for inference of B and T quartets. Doucumentation if for internal use only.

initBquartets(pTable, m, alpha, beta, colptest, colpstar, Bquartets)

`pTable`	a quartet table with p-values
`m`	number of rows in pTable
`alpha`	critical value for tree test
`beta`	critical value for star tree test
`colptest`	column with p value for tree test
`colpstar`	column with p value for star tree test
`Bquartets`	0/1 vector encoding initial B quartets

two lists, "Lout" with indices of initial B-quartets, "Bout" with TRUE/FALSE for all sets of 4 taxa indicating which are B-quartets