dataYeastRokas {MSCquartets}

Yeast gene tree dataset

Description

A text file dataset for Yeast containing 106 gene trees on 8 taxa (7 Saccharomyces and 1 Candida outgroup). This is a subset of the data of Rokas et al. (2003).

Format

A text file with 106 topological Newick gene trees on the taxa: Sbay, Scas, Scer, Sklu, Skud, Smik, Spar, and Calb (outgroup).

Details

File is accessed as system.file("extdata","dataYeastRokas",package="MSCquartets"), for example via the ape command:

gts=read.tree(file = system.file("extdata","dataYeastRokas",package="MSCquartets"))

Source

https://wiki.rice.edu/confluence/download/attachments/8898533/yeast.trees?version=1&modificationDate=1360603275797&api=v2

References

Rokas A, Williams B, Carrol S (2003). “Genome-scale approaches to resolving incongruence in molecular phylogenies.” Nature, 425, 798–804.