BQinference {MSCquartets}

Main loop of B-quartet inference

Description

This is a C++ function, used in TINNIKdist, to infer B and T quartets. Doucumentation if for internal use only.

Usage

BQinference(pTable, C, Cn4, n, Bquartets, L1, lenL1, Nrule1, Nrule2, cuttops)

Arguments

pTable

a quartet table with p-values

C

precomputed binomial coefficients

Cn4

precomputed binomial coefficient

n

number of taxa

Bquartets

0/1 vector of initial Bquartets

L1

vector of recently inferred B quartets

lenL1

lnegth of L1

Nrule1

count of inference from rule 1

Nrule2

count of inference from rule 2

cuttops

inferred cut topologies

Value

a 0/1 vector indicating which sets of 4-taxa are B-quartets

See Also

quartetTable, quartetTableParallel