getIntensityThreshold {MOCHA}

getIntensityThreshold

Description

getIntensityThreshold takes the output of peak calling with callOpenTiles and creates sample-tile matrices containing the signal intensity at each tile.

Usage

getIntensityThreshold(
  TSAM,
  cellPopulations = "all",
  type = "mean",
  returnPlots = TRUE,
  verbose = FALSE
)

Arguments

TSAM

a SummarizedExperiment object generated by MOCHA

cellPopulations

vector of strings. Cell subsets found in the TSAM, or the word 'All' if all should be used.

type

string. Describes the type of metric to be used. Options include median or mean.

returnPlots

Boolean. Default is TRUE and returns a plot of

verbose

Set TRUE to display additional messages. Default is FALSE.

Value

plot object