exportDifferentials {MOCHA}

exportDifferentials

Description

exportDifferentials exports the differential peaks output GRangesList output from getDifferentialAccessibleTiles to bigBed format for visualization in genome browsers.

Usage

exportDifferentials(
  SampleTileObject,
  DifferentialsGRList,
  outDir,
  verbose = FALSE
)

Arguments

SampleTileObject

The SummarizedExperiment object output from getSampleTileMatrix

DifferentialsGRList

GRangesList output from getDifferentialAccessibleTiles

outDir

Desired output directory where bigBed files will be saved

verbose

Set TRUE to display additional messages. Default is FALSE.

Value

outList A List of output filepaths

Examples

## Not run: 
MOCHA::exportDifferentials(
  SampleTileObject = SampleTileMatrices,
  DifferentialsGRList,
  outDir = tempdir(),
  verbose = TRUE
)

## End(Not run)