combineSampleTileMatrix {MOCHA}

combineSampleTileMatrix

Description

combineSampleTileMatrix combines all celltypes in a SampleTileMatrix object into a SummarizedExperiment with one single matrix across all cell types and samples,

Usage

combineSampleTileMatrix(SampleTileObj, NAtoZero = TRUE, verbose = FALSE)

Arguments

SampleTileObj

The SummarizedExperiment object output from getSampleTileMatrix containing your sample-tile matrices

NAtoZero

Set NA values in the sample-tile matrix to zero

verbose

Set TRUE to display additional messages. Default is FALSE.

Value

TileCorr A data.table correlation matrix