addAccessibilityShift {MOCHA}

addAccessibilityShift

Description

addAccessibilityShift will add a new condition to the SummarizedExperiment output of extractRegion, which will contain the difference in accessibility between two conditions

Usage

addAccessibilityShift(CountSE, foreground, background, assayName = NULL)

Arguments

CountSE

The SummarizedExperiment object output from extractRegion

foreground

Group that will be used as the foreground for the subtraction of accessibility

background

Group that will be used as the background for the subtraction of accessibility

assayName

The name given to the new assay that is difference in accessibility between foreground and background.

Value

countSE a SummarizedExperiment containing coverage for the given input cell populations.

Examples

## Not run: 
# CountSE is a SummarizedExperiment generated by extractRegion()
countSE <- MOCHA::addAccessibilityShift(
  CountSE = CountSE,
  foreground = "Condition1",
  background = "Condition2",
  assayName = "AccessibilityChanges"
)

## End(Not run)