MKomics-package {MKomics} | R Documentation |
Omics Data Analysis.
Description
Similarity plots based on correlation and median absolute deviation (MAD); adjusting colors for heatmaps; aggregate technical replicates; calculate pairwise fold-changes and log fold-changes; computate one- and two-way ANOVA; simplified interface to package 'limma' (Ritchie et al. (2015), <doi:10.1093/nar/gkv007>) for moderated t-test and one-way ANOVA; Hamming and Levenshtein (edit) distance of strings as well as optimal alignment scores for global (Needleman-Wunsch) and local (Smith-Waterman) alignments with constant gap penalties (Merkl and Waack (2009), ISBN:978-3-527-32594-8).
Details
Package: | MKomics |
Type: | Package |
Version: | 0.7 |
Date: | 2021-08-08 |
Depends: | R(>= 3.5.0) |
Imports: | stats, utils, graphics, grDevices, RColorBrewer, robustbase, limma |
Suggests: | knitr, rmarkdown |
License: | LGPL-3 |
URL: | https://www.stamats.de/ |
library(MKomics)
Author(s)
Matthias Kohl https://www.stamats.de
Maintainer: Matthias Kohl matthias.kohl@stamats.de
[Package MKomics version 0.7 Index]