xrmsd {MDplot} | R Documentation |
XRMSD plot in heatmap style
Description
Plots an heatmap according to the RMSD values for a 2D snapshot matrix, based on molecular dynamics trajectories.
Usage
xrmsd( xrmsdValues,
printLegend = TRUE,
xaxisRange = NA,
yaxisRange = NA,
colours = NA,
rmsdUnit = "nm",
barePlot = FALSE,
... )
Arguments
xrmsdValues |
Input matrix (three rows: x-values, y-values, RMSD-value). Can be generated by function |
printLegend |
If |
xaxisRange |
A vector of boundaries for the x-snapshots. |
yaxisRange |
A vector of boundaries for the y-snapshots. |
colours |
A vector with colour names for the span palette. |
rmsdUnit |
Specifies, in which unit the RMSD values are given. |
barePlot |
Boolean, indicating whether the plot is to be made without any additional information. |
... |
Additional arguments (ellipsis). |
Value
This function does not return data.
Author(s)
Christian Margreitter
Examples
# GROMOS (see load_xrmsd() for other input possibilities)
xrmsd( load_xrmsd( system.file( "extdata/xrmsd_example.txt.gz",
package = "MDplot" ),
factor = 10000 ) )
[Package MDplot version 1.0.1 Index]