adhocGene.TabulateExpression.PSI.10x {MARVEL} | R Documentation |
Dotplot of splice junction expression values for a specified gene
Description
Creates a dotplot of splice junction expression value of a specified gene across different cell groups. The gene and cell groups were defined earlier in adhocGene.TabulateExpression.Gene.10x
function.
Usage
adhocGene.TabulateExpression.PSI.10x(MarvelObject, min.pct.cells = 10)
Arguments
MarvelObject |
Marvel object. S3 object generated from |
min.pct.cells |
Numeric value. Percentage of cell expressing the splice junction in a cell group, below which, the value be re-coded as missing and appear will be omitted from the plot. A splice junction is considered to be expressed in a given cell if it has count >=1. |
Value
An object of class S3 with new slots MarvelObject$adhocGene$Expression$PSI$Table
and MarvelObject$adhocGene$Expression$PSI$Plot
.
Examples
marvel.demo.10x <- readRDS(system.file("extdata/data",
"marvel.demo.10x.rds",
package="MARVEL")
)
# SJ usage profiling
marvel.demo.10x <- adhocGene.TabulateExpression.PSI.10x(
MarvelObject=marvel.demo.10x,
min.pct.cells=10
)
# Check output
marvel.demo.10x$adhocGene$Expression$PSI$Plot
[Package MARVEL version 1.4.0 Index]