IsoSwitch.PlotExpr {MARVEL}

Plot gene-splicing relative change

Description

Plots delta PSI vs gene log2-fold change

Usage

IsoSwitch.PlotExpr(MarvelObject, anno = FALSE)

Arguments

MarvelObject

Marvel object. S3 object generated from CompareValues.Genes.10x function.

anno

Logical value. If set to TRUE, genes with coordinated, opposing or complex change relative to splicing change will be annotated on the plot. Default value is FALSE.

Value

An object of class S3 containing with new slots MarvelObject$DE$Cor$PSIvsExpr$Plot.

Examples

marvel.demo <- readRDS(system.file("extdata/data", "marvel.demo.rds", package="MARVEL"))

marvel.demo <- IsoSwitch.PlotExpr(MarvelObject=marvel.demo, anno=TRUE)

# Check output
marvel.demo$DE$Cor$PSIvsExpr$Plot