CheckAlignment.SJ {MARVEL}

Check splice junction data

Description

Checks if the metadata aligns with the columns and rows of the matrix for splice junction data prior to PSI computation.

Usage

CheckAlignment.SJ(MarvelObject)

Arguments

MarvelObject

Marvel object. S3 object generated from CreateMarvelObject function.

Value

An object of class S3 with updated slots MarvelObject$SplicePheno, MarvelObject$PSI and MarvelObject$IntronCounts.

Examples

marvel.demo <- readRDS(system.file("extdata/data", "marvel.demo.rds", package="MARVEL"))

marvel.demo <- CheckAlignment.SJ(MarvelObject=marvel.demo)