| mcl_mtrx {MAGNAMWAR} | R Documentation |
Final output of AnalyzeOrthoMCL
Description
A matrix containing the final results of statistical analysis.
Usage
mcl_mtrx
Format
A matrix with 17 rows and 7 variables:
- OG
taxa cluster id, as defined by OrthoMCL
- pval1
p-value, based on presence absence
- corrected_pval1
Bonferroni p-value, corrected by number of tests
- mean_OGContain
mean of all taxa phenotypes in that OG
- mean_OGLack
mean of all taxa phenotypes not in that OG
- taxa_contain
taxa in that cluster
- taxa_miss
taxa not in that cluster
[Package MAGNAMWAR version 2.0.4 Index]