mcl_mtrx {MAGNAMWAR}R Documentation

Final output of AnalyzeOrthoMCL

Description

A matrix containing the final results of statistical analysis.

Usage

mcl_mtrx

Format

A matrix with 17 rows and 7 variables:

OG

taxa cluster id, as defined by OrthoMCL

pval1

p-value, based on presence absence

corrected_pval1

Bonferroni p-value, corrected by number of tests

mean_OGContain

mean of all taxa phenotypes in that OG

mean_OGLack

mean of all taxa phenotypes not in that OG

taxa_contain

taxa in that cluster

taxa_miss

taxa not in that cluster


[Package MAGNAMWAR version 2.0.4 Index]