joined_mtrx_grps {MAGNAMWAR}

Final output of join_repset.

Description

A data frame containing the final results of statistical analysis with protein ids, annotations, and sequences added.

Usage

joined_mtrx_grps

Format

A data frame with 10 rows and 11 variables:

OG

taxa cluster id, as defined by OrthoMCL

pval1

p-value, based on presence absence

corrected_pval1

Bonferroni p-value, corrected by number of tests

mean_OGContain

mean of all taxa phenotypes in that OG

mean_OGLack

mean of all taxa phenotypes not in that OG

taxa_contain

taxa in that cluster

taxa_miss

taxa not in that cluster

rep_taxon

randomly selected representative taxa from the cluster

rep_id

protein id, from randomly selected representative taxa

rep_annot

fasta annotation, from randomly selected representative taxa

rep_seq

AA sequence, from randomly selected representative taxa