ManhatGrp {MAGNAMWAR}

Manhattan Plot of All Taxa

Description

Manhattan plot that graphs all p-values for taxa.

Usage

ManhatGrp(mcl_data, mcl_mtrx, tree = NULL)

Arguments

mcl_data

FormatAfterOrtho output

mcl_mtrx

output of AnalyzeOrthoMCL()

tree

tree file optional, used for ordering taxa along x axis

Value

a manhattan plot

References

Some sort of reference

Examples

ManhatGrp(after_ortho_format, mcl_mtrx)

#@param equation of line of significance, defaults to -log10((.05)/dim(pdgs)[1])