lncPath2Table {LncPath} | R Documentation |
Simplify the lncPath object into table
Description
Simplify the LncPath object into a data frame, which discribes the detail imformation of each pathway.
Usage
lncPath2Table(Result)
Arguments
Result |
The lncPath object come from the lncPath function. |
Details
The lncPath object come from the lncPath function may be too complicated for user to view. This function can simplify it into a data frame. Each row of the data frame describe the detail of one pathway, including informations of pathway name, number of genes in the pathway, enrichment scores, normalized enrichment scores, p value and false discovery rate.
Value
A data frame, rows are pathways and columns are details of each pathway.
Author(s)
Junwei Han <hanjunwei1981@163.com>, Zeguo Sun <zeguo.sun@163.com>
References
Subramanian, A., Tamayo, P., Mootha, V.K., Mukherjee, S., Ebert, B.L., Gillette, M.A., Paulovich, A., Pomeroy, S.L., Golub, T.R., Lander, E.S. et al. (2005) Gene set enrichment analysis: a knowledgebased approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A, 102, 15545-15550.
Examples
##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
## The function is currently defined as
Result <- getExampleData("Result")
Table <- lncPath2Table(Result)
head(Table)