rec_const {LeMaRns} | R Documentation |
The constant stock recruitment function
Description
Calculates the number of recruits as given by the constant stock recruitment function.
Usage
rec_const(SSB, rec_args)
Arguments
SSB |
A numeric value representing the Spawning Stock Biomass (SSB) of a given species (g). |
rec_args |
A list object of length |
Details
The number of recruits is defined as the value of a
.
Value
A numeric value representing the number of recruits of a given species.
See Also
calc_recruits
, make_rec_fun
, get_rec_fun
, rec_BH
, rec_Ricker
, rec_hockey
, rec_linear
and calc_SSB
Examples
# Set up the inputs to the function - species-independent parameters
nfish <- nrow(NS_par)
nsc <- 32
maxsize <- max(NS_par$Linf)*1.01 # the biggest size is 1% bigger than the largest Linf
l_bound <- seq(0, maxsize, maxsize/nsc); l_bound <- l_bound[-length(l_bound)]
u_bound <- seq(maxsize/nsc, maxsize, maxsize/nsc)
mid <- l_bound+(u_bound-l_bound)/2
# Set up the inputs to the function - species-specific parameters
Linf <- NS_par$Linf # the von-Bertalanffy asymptotic length of each species (cm).
W_a <- NS_par$W_a # length-weight conversion parameter.
W_b <- NS_par$W_b # length-weight conversion parameter.
k <- NS_par$k # the von-Bertalnaffy growth parameter.
Lmat <- NS_par$Lmat # the length at which 50\% of individuals are mature (cm).
# Get phi_min
tmp <- calc_phi(k, Linf, nsc, nfish, u_bound, l_bound, calc_phi_min=FALSE,
phi_min=0.1) # fixed phi_min
phi_min <- tmp$phi_min
# Run calc_ration_growthfac()
tmp <- calc_ration_growthfac(k, Linf, nsc, nfish, l_bound, u_bound, mid, W_a, W_b, phi_min)
sc_Linf <- tmp$sc_Linf
wgt <- tmp$wgt
# Calculate maturity
mature <- calc_mature(Lmat, nfish, mid, kappa=rep(10, nfish), sc_Linf)
# Create recruitment functions
stored_rec_funs <- get_rec_fun(rep("hockey-stick", nfish))
recruit_params <- do.call("Map", c(c, list(a=NS_par$a, b=NS_par$b)))
# Get an initial population
N0 <- get_N0(nsc, nfish, mid, wgt, sc_Linf, intercept=1e10, slope=-5)
# Calculate the SSB
SSB <- calc_SSB(mature, N0, wgt)
rec_const(SSB[1], recruit_params[[1]])
[Package LeMaRns version 0.1.2 Index]