| example_tables {ICBioMark} | R Documentation |
Mutation Matrices from Simulated Data
Description
Mutation data extracted from the pre-loaded example mutation data example_maf_data, using the function get_mutation_tables().
Usage
example_tables
Format
A list with three entries:
- train
An object 'train'.
- val
An object 'val'.
- test
An object 'test'.
Each of these three objects is a list with the following entries (for more detail see the documentation for the function get_table_from_maf()):
- matrix
A sparse matrix of mutations.
- sample_list
A character vector of sample IDs, corresponding to the rows of the mutation matrix.
- gene_list
A character vector of gene names.
- mut_types_list
A character vector of mutation types.
- colnames
A character vector of gene name/mutation type combinations (in each case separated by the character "_"), corresponding to the columns of the mutation matrix.
[Package ICBioMark version 0.1.4 Index]