example_first_pred_tmb {ICBioMark}

First-Fit Predictive Model Fitting on Example Data

Description

An example output from the function pred_first_fit(), applied to pre-loaded example mutation data.

Usage

example_first_pred_tmb

Format

A list with six entries:

fit

A gglasso fit.

panel_genes

A matrix where each row corresponds to a gene, each column to an iteration of the group lasso with a different penalty factor, and the elements booleans specifying whether that gene was selected to be included in that iteration.

panel_lengths

A vector giving total panel length for each gglasso iteration.

p

The vector of weights used in the optimisation procedure.

K

The bias penalty factor used in the optimisation procedure.

names

Gene and mutation type information as used when fitting the generative model.