throat {HMPTrees}

Throat Data Set

Description

A data set containing all taxa from 22 subjects.

Usage

data(throat)

Format

The format is a data frame of 529 rows by 22 columns, with each column being a separate subject and each row being a different taxa denoted by the row names. The taxanomical levels are separated by a '.' in their names (Bacteria.Phylum.Class....). The values in each column are the sum of values that each taxa had in an RDP file. It should also be noted that the samples have not been normalized and should be used with 'formatData'. Also any level that ends with a U was unclassified in the RDP file.