| updateAll {HLAtools} | R Documentation |
Update All Package Data Objects Derived from IPD-IMGT/HLA Database Resources
Description
Applies updateAlleleListHistory(), atlasFull(), buildGazeteer(), extractGeneTypes(), and ffN() to update the alleleListHistory, HLAatlas, HLAgazeteer, IMGTHLAGeneTypes and fragmentFeatureNames data objects.
A new alleleListHistory data object should be generated with each IPD-IMGT/HLA Database release. The other data objects will likely only change when new genes are added to the IPD-IMGT/HLA Database.
Usage
updateAll(updateType = "all", version = getLatestVersion())
Arguments
updateType |
A character vector of the names of data objects to be updated. By default, updateAll() builds all five data objects (updateType="all"). Alternatively specific data objects can be updated; e.g., updateType="alleleListHistory" or updateType=c("alleleListHistory","fragmentFeatureNames"). |
version |
A numeric value or character string identifying the version of the ANHIG/IMGTHLA Github repository to build these objects from. By default, updateAll() calls the getLatestVersion() function to identify the most recent IPD-IMGT/HLA Database release. |
Value
No value is returned. The desired versions of the specified data objects are built into the environment that called updateAll().
Note
Generating a new HLAatlas can take 5 minutes or more to complete.