| uniSearch {HLAtools} | R Documentation |
Search Sequences at a Single Position for an Allele
Description
Generates a character string of the peptide, codon or nucleotide sequence at the specified position for the specified HLA allele.
Usage
uniSearch(alignType, locus, allele, position, prefix = TRUE, trimmed = FALSE)
Arguments
alignType |
The type of alignment being searched. Allowed values are "prot", "codon", "nuc" and "gen". Only one 'alignType' value is allowed. |
locus |
A specific HLA locus. |
allele |
The name of the allele being searched. |
position |
The specified position. |
prefix |
A logical that indicates if the position number(s) should be included in the result. |
trimmed |
A logical identifying whether 'allele' is a two-field, 'trimmed' allele name (trimmed=TRUE), or a full-length name (trimmed=FALSE). The default value is FALSE. |
Value
The peptide residue, codon or nucleotide sequence at specified position for specified allele as available in the ANHIG/IMGTHLA Github Repository.
Note
For internal HLAtools use.