multiUpdateGL {HLAtools}

Update columns of GL String Code data to a desired IPD-IMGT/HLA Database version.

Description

Updates columns from a data frame in GL String Code format to a desired reference database version.

Usage

multiUpdateGL(GLstringArray, Version, expand = FALSE)

Arguments

GLstringArray

An array of HLA allele names and operators in GL String code format identifying their relation with one another and the pertinent IPD-IMGT/HLA Database release version.

Version

A character string identifying the desired version to which the alleles should be updated, going back to version 1.05.0.

expand

A logical to determine whether to include only the direct HLA ID match, or all possible allele matches.

Value

A version of the input array of GL String Codes (in a data frame) updated to the desired version.

References

Mack et al. HLA 2023;102(2):206-212 https://doi.org/10.1111/tan.15126

Mack et al. HLA 05 July 2023 https://doi.org/10.1111/tan.15145

Examples

# Example update of two GL Strings Codes containing truncated alleles from version 3.1.0 to 3.53.0.
GLSC.ex[[2]][1:2] 
multiUpdateGL(GLSC.ex[[2]][1:2], Version = "3.53.0")