checkAlignType {HLAtools}

Ensure that AlignType Values are Valid

Description

Evaluates 'alignType' values to ensure that only "prot", "nuc", "codon" and "gen" are passed to downstream functions. If any other values are entered, a message describing excluded values is generated. If no valid 'alignType' values are are present, an error is generated, and any calling function is ended.

Usage

checkAlignType(alignType)

Arguments

alignType

A vector of character values specifying sequence alignment types to be used for a function.

Value

A character vector that includes only allowed 'alignType' values.

Examples

checkAlignType(c("nuc","prot","gDNA"))