atlasFull {HLAtools}

Generate a Complete set of Protein, Coding nucleotide and Genomic Nucleotide Atlases

Description

Applies atlasMaker() to build a set of 'atlases' identifying the gene-feature (exon, intron, and UTR) boundaries in the protein, coding nucleotide, and genomic nucleotide alignments of all HLA loci.

Usage

atlasFull(version = "Latest")

Arguments

version

A character string identifying the version of the ANHIG/IMGTHLA Github repository used to generate atlases. The default value, "Latest", generates an atlas for the most recent IPD-IMGT/HLA Database release.

Value

A list object containing a list of data frames of protein (prot), coding nucleotide (nuc), and genomic nucleotide (gen) atlases for all genes in the IPD-IMGT/HLA Database release, along with a character vector identifying the pertinent IPD-IMGT/HLA Database release.

Note

Data informing the atlases were downloaded from the ANHIG/IMGTHLA Github repository.

For internal HLAtools use.