HLAatlas {HLAtools}

Boundary Positions of Exons, Introns and UTRs in Amino Acid, cDNA and gDNA Alignments

Description

A list object of sub-lists of R dataframes (atlases) for each locus with a protein (prot), cDNA (nuc), and gDNA (gen) alignment. Each atlas identifies the position of the exon, intron or UTR boundaries in an alignment. This object is built by the atlasFull() function.

Usage

data(HLAatlas)

Format

A list of 4 elements that include the gene features boundaries in each ANHIG/IMGTHLA sequence alignment.

• (prot: peptide-alignment atlases)

• (nuc: cDNA-alignment atlases)

• (gen: gDNA-alignment atlases)

• (version: The IPD-IMGT/HLA Database release version under which these data were generated)

Source

https://github.com/ANHIG/IMGTHLA/tree/Latest/alignments