| GIANT {HLAtools} | R Documentation |
GLupdate-Integrated Allele Name Translation
Description
Calls GLupdate() to translate the HLA allele names in a vector or data frame between two IPD-IMGT/HLA Database release versions.
Usage
GIANT(data, transFrom, transTo)
Arguments
data |
A data frame or vector of HLA allele name character string data. Allele names in vectors must include locus prefixes. Data frames must include column headers identifying a single locus for the allele names in that column. |
transFrom |
A dot-formatted character string identifying the IPD-IMGT/HLA Database version (e.g. 3.57.0) under which the HLA data were generated. |
transTo |
A dot-formatted character string identifying the IPD-IMGT/HLA Database version (e.g. 2.25.0) to which which the HLA data are to be translated. |
Value
A data frame or vector of HLA allele name data in the 'transTo' release.
Note
GIANT() will ignore the first two columns of BIGDAWG-formatted data frames, which include non-HLA data. All columns in non-BIGDAWG-formatted data frames are expected to contain HLA allele names.
Examples
GIANT(c("A*01:01:01:01","DOA*01:01:01:01"),"3.56.0","2.20.0")
updsHLAdata <- GIANT(sHLAdata,"3.56.0","2.25.0")