importFQ {GenomicTools.fileHandler} | R Documentation |
Importing a Fastq File.
Description
This function imports a standard fastq file
Usage
importFQ(file)
Arguments
file |
Specifies the filename/path |
Details
This function imports a standard fastq file that consists out of blocks of four lines per entry
Value
An object of class fq
containing the sequences and the quality meausure. The names correspond to the sequence names given in the fasta file.
Author(s)
Daniel Fischer
See Also
print.fq, summary.fq
Examples
# Define here the location on HDD for the example file
fpath <- system.file("extdata","example.fastq", package="GenomicTools.fileHandler")
# Import the example fastq file
fastqFile <- importFQ(file=fpath)
[Package GenomicTools.fileHandler version 0.1.5.9 Index]