makeBinaryTemplateAndProbabilityTemplate {GRAPE}

Make binary template and probability template

Description

Takes in matrix, where columns are samples and rows are pathway genes, outputs the binary and probability templates

Usage

makeBinaryTemplateAndProbabilityTemplate(submat)

Arguments

submat

A matrix where columns are samples and rows are pathway genes

Value

List containing binary template vector and probability template vector

Examples

submat <- cbind(c(1,3,2,1.5),c(2,3,1.5,1.2),c(1.4,4.2,3.5,3.8))
rownames(submat) <- c("gene_A","gene_B","gene_C","gene_D")
temp <- makeBinaryTemplateAndProbabilityTemplate(submat)
bt <- temp$binary_template; pt <- temp$probability_template
cbind(bt,pt)