PD_defict {FishPhyloMaker}

Title Calculate the amount of phylogenetic deficit in assemblages

Description

Title Calculate the amount of phylogenetic deficit in assemblages

Usage

PD_defict(phylo, data, level = "Congeneric_insertion")

Arguments

phylo

Phylogenetic tree in newick format, can be an object from FishPhyloMaker function

data

A data frame containing the classification informing the level of insertions. This can be obtained from FishPhyloMaker function

level

Character indicating which level must be considered in the calculation of PD deficit. default is "Congeneric_insertion"

Value

A scalar containing the value of PD deficit for the level chosen

See Also

FishPhyloMaker for phylogeny and data frame containing the classification of insertions